/* Sound_extensions.cpp
 *
 * Copyright (C) 1993-2011 David Weenink
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or (at
 * your option) any later version.
 *
 * This program is distributed in the hope that it will be useful, but
 * WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 * General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
 */

/*
 djmw 20001109 Sound_scale->Vector_scale
 djmw 20020516 GPL header
 djmw 20020523 Removed Sound_read/writeWAVAudioFile
 djmw 20030926 Sound_changeGender
 djmw 20040405 Renamed: Sound_overrideSamplingFrequency
 djmw 20041124 Changed call to Sound_to_Spectrum & Spectrum_to_Sound.
 djmw 20050620 Changed Pitch_HERTZ to Pitch_UNIT_HERTZ
 djmw 20050628 New and extended Sound_createShepardToneComplex that corrects incorrect amplitudes of tones in complex.
 		(amplitudes were on linear instead of log scale)
 djmw 20060921 Added Sound_to_IntervalTier_detectSilence
 djmw 20061010 Removed crashing bug in Sound_to_IntervalTier_detectSilence.
 djmw 20061201 Interface change: removed minimumPitch parameter from Sound_and_Pitch_changeGender.
 djmw 20061214 Sound_and_Pitch_changeSpeaker removed warning.
 djmw 20070103 Sound interface changes
 djmw 20070129 Warning added in changeGender_old.
 djmw 20071022 Possible (bug?) correction in Sound_createShepardToneComplex
 djmw 20071030 Sound_preEmphasis: no pre-emphasis above the Nyquist frequency.
 djmw 20071202 Melder_warning<n>
 djmw 20080122 float -> double
 djmw 20080320 +Sound_fade.
 djmw 20080530 +Sound_localAverage
 pb 20090926 Correction in Sound_and_Pitch_changeGender_old
 djmw 20091023 Added Sound_drawIntervals
 djmw 20091028 Sound_drawIntervals -> Sound_drawParts + Graphics_function
 djmw 20091126 Sound_drawParts -> Sound_drawWheres
 djmw 20091211 Sound_fade: removed erroneous warning
 djmw 20100318 Cross-correlation, convolution and autocorrelation
 djmw 20100325 -Cross-correlation, convolution and autocorrelation
 djmw 20111227 Sound_trimSilencesAtStartAndEnd and Sound_getStartAndEndTimesOfSounding
 djmw 20120616 Change 0.8 to 1.25 in Sound_Point_Pitch_Duration_to_Sound
*/

#include <ctype.h>
#include "Formula.h"
#include "Intensity_extensions.h"
#include "Sound_extensions.h"
#include "Sound_and_Spectrum.h"
#include "Spectrum_extensions.h"
#include "Sound_to_Intensity.h"
#include "Sound_to_Pitch.h"
#include "Vector.h"
#include "Pitch_extensions.h"
#include "Pitch_to_PitchTier.h"
#include "Pitch_to_PointProcess.h"
#include "Polygon_extensions.h"
#include "TextGrid_extensions.h"
#include "DurationTier.h"
#include "Ltas.h"
#include "Manipulation.h"
#include "NUM2.h"

#define MAX_T  0.02000000001   /* Maximum interval between two voice pulses (otherwise voiceless). */

static void PitchTier_modifyExcursionRange (PitchTier me, double tmin, double tmax, double multiplier, double fref_Hz) {
	if (fref_Hz <= 0) {
		return;
	}

	double fref_st = 12.0 * log (fref_Hz / 100.0) / NUMln2;

	for (long i = 1; i <= my points -> size; i++) {
		RealPoint point = (RealPoint) my points -> item [i];
		double f = point -> value;
		if (point -> number < tmin || point -> number > tmax) {
			continue;
		}
		if (f > 0) {
			double f_st = fref_st + 12.0 * log2 (f / fref_Hz) * multiplier;
			point -> value = 100.0 * exp (f_st * (NUMln2 / 12.0));
		}
	}
}

static void Pitch_scaleDuration (Pitch me, double multiplier) {
	if (multiplier != 1) {
		// keep xmin at the same value
		my dx *= multiplier;
		my x1 = my xmin + (my x1 - my xmin) * multiplier;
		my xmax = my xmin + (my xmax - my xmin) * multiplier;
	}
}

static void Pitch_scalePitch (Pitch me, double multiplier) {
	for (long i = 1; i <= my nx; i++) {
		double f = my frame[i].candidate[1].frequency;
		f *= multiplier;
		if (f < my ceiling) {
			my frame[i].candidate[1].frequency = f;
		}
	}
}

static void i1write (Sound me, FILE *f, long *nClip) {
	double *s = my z[1], min = -128, max = 127;
	*nClip = 0;
	for (long i = 1; i <= my nx; i++) {
		double sample = floor (s[i] * 128 + 0.5);
		if (sample > max) {
			sample = max;
			(*nClip) ++;
		} else if (sample < min) {
			sample = min;
			(*nClip) ++;
		}
		binputi1 (sample, f);
	}
}

static void i1read (Sound me, FILE *f) {
	double *s = my z[1];
	for (long i = 1; i <= my nx; i++) {
		s[i] = bingeti1 (f) / 128.0;
	}
}

static void u1write (Sound me, FILE *f, long *nClip) {
	double *s = my z[1], min = 0, max = 255;
	*nClip = 0;
	for (long i = 1; i <= my nx; i++) {
		double sample = floor ( (s[i] + 1) * 255 / 2 + 0.5);
		if (sample > max) {
			sample = max;
			(*nClip) ++;
		} else if (sample < min) {
			sample = min;
			(*nClip) ++;
		}
		binputu1 (sample, f);
	}
}

static void u1read (Sound me, FILE *f) {
	double *s = my z[1];
	for (long i = 1; i <= my nx; i++) {
		s[i] = bingetu1 (f) / 128.0 - 1.0;
	}
}

static void i2write (Sound me, FILE *f, int littleEndian, long *nClip) {
	double *s = my z[1], min = -32768, max = 32767;
	void (*put) (int, FILE *) = littleEndian ? binputi2LE : binputi2;
	*nClip = 0;
	for (long i = 1; i <= my nx; i++) {
		double sample = floor (s[i] * 32768 + 0.5);
		if (sample > max) {
			sample = max;
			(*nClip) ++;
		} else if (sample < min) {
			sample = min;
			(*nClip) ++;
		}
		put (sample, f);
	}
}

static void i2read (Sound me, FILE *f, int littleEndian) {
	double *s = my z[1];
	int (*get) (FILE *) = littleEndian ? bingeti2LE : bingeti2;
	for (long i = 1; i <= my nx; i++) {
		s[i] = get (f) / 32768.;
	}
}

static void u2write (Sound me, FILE *f, int littleEndian, long *nClip) {
	double *s = my z[1], min = 0, max = 65535;
	void (*put) (unsigned int, FILE *) = littleEndian ? binputu2LE : binputu2;
	*nClip = 0;
	for (long i = 1; i <= my nx; i++) {
		double sample = floor ( (s[i] + 1) * 65535 / 2 + 0.5);
		if (sample > max) {
			sample = max;
			(*nClip) ++;
		} else if (sample < min) {
			sample = min;
			(*nClip) ++;
		}
		put (sample, f);
	}
}

static void u2read (Sound me, FILE *f, int littleEndian) {
	double *s = my z[1];
	unsigned int (*get) (FILE *) = littleEndian ? bingetu2LE : bingetu2;
	for (long i = 1; i <= my nx; i++) {
		s[i] = get (f) / 32768.0 - 1.0;
	}
}

static void i4write (Sound me, FILE *f, int littleEndian, long *nClip) {
	double *s = my z[1]; double min = -2147483648.0, max = 2147483647.0;
	void (*put) (long, FILE *) = littleEndian ? binputi4LE : binputi4;
	*nClip = 0;
	for (long i = 1; i <= my nx; i++) {
		double sample = floor (s[i] * 2147483648.0 + 0.5);
		if (sample > max) {
			sample = max;
			(*nClip) ++;
		} else if (sample < min) {
			sample = min;
			(*nClip) ++;
		}
		put (sample, f);
	}
}

static void i4read (Sound me, FILE *f, int littleEndian) {
	double *s = my z[1];
	long (*get) (FILE *) = littleEndian ? bingeti4LE : bingeti4;
	for (long i = 1; i <= my nx; i++) {
		s[i] = get (f) / 2147483648.;
	}
}


static void u4write (Sound me, FILE *f, int littleEndian, long *nClip) {
	double *s = my z[1]; double min = 0.0, max = 4294967295.0;
	void (*put) (unsigned long, FILE *) = littleEndian ? binputu4LE : binputu4;
	*nClip = 0;
	for (long i = 1; i <= my nx; i++) {
		double sample = floor (s[i] * 4294967295.0 + 0.5);
		if (sample > max) {
			sample = max;
			(*nClip) ++;
		} else if (sample < min) {
			sample = min;
			(*nClip) ++;
		}
		put (sample, f);
	}
}

static void u4read (Sound me, FILE *f, int littleEndian) {
	double *s = my z[1];
	long (*get) (FILE *) = littleEndian ? bingeti4LE : bingeti4;
	for (long i = 1; i <= my nx; i++) {
		s[i] = get (f) / 2147483648.0 - 1.0;
	}
}


static void r4write (Sound me, FILE *f) {
	double *s = my z[1];
	for (long i = 1; i <= my nx; i++) {
		binputr4 (s[i], f);
	}
}

static void r4read (Sound me, FILE *f) {
	double *s = my z[1];
	for (long i = 1; i <= my nx; i++) {
		s[i] = bingetr4 (f);
	}
}

static long fileLengthBytes (FILE *f) {
	long begin, end, current;
	if ( (current = ftell (f)) < 0 ||
	        fseek (f, 0L, SEEK_SET) || (begin = ftell (f)) < 0 ||
	        fseek (f, 0L, SEEK_END) || (end = ftell (f)) < 0 ||
	        fseek (f, current, SEEK_SET)) {
		end = begin = 0;
	}
	return end - begin;
}

/* Old TIMIT sound-file format */
Sound Sound_readFromCmuAudioFile (MelderFile file) {
	try {
		int littleEndian = 1;
		autofile f = Melder_fopen (file, "rb");
		if (bingeti2LE (f) != 6) {
			Melder_throw ("Incorrect header size.");
		}
		bingeti2LE (f);
		short nChannels = bingeti2LE (f);
		if (nChannels < 1) {
			Melder_throw ("Incorrect number of channels.");
		}
		if (nChannels > 1) {
			Melder_throw ("File has multiple channels: cannot read.");
		}
		if (bingeti2LE (f) < 1) {
			Melder_throw ("Incorrect sampling frequency.");
		}
		long nSamples = bingeti4LE (f);
		if (nSamples < 1) {
			Melder_throw ("Incorrect number of samples.");
		}
		autoSound me = Sound_createSimple (1, nSamples / 16000., 16000);
		i2read (me.peek(), f, littleEndian);
		f.close (file);
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not read from CMU audio file ", MelderFile_messageName (file), ".");
	}
}

Sound Sound_readFromRawFile (MelderFile file, const char *format, int nBitsCoding,
                             int littleEndian, int unSigned, long skipNBytes, double samplingFrequency) {
	try {
		autofile f = Melder_fopen (file, "rb");
		if (! format) {
			format = "integer";
		}
		if (nBitsCoding <= 0) {
			nBitsCoding = 16;
		}
		long nBytesPerSample = (nBitsCoding + 7) / 8;
		if (strequ (format, "float")) {
			nBytesPerSample = 4;
		}
		if (nBytesPerSample == 3 || nBytesPerSample > 4) {
			Melder_throw ("Number of bytes per sample should be 1, 2 or 4.");
		}
		if (skipNBytes <= 0) {
			skipNBytes = 0;
		}
		long nSamples = (fileLengthBytes (f) - skipNBytes) / nBytesPerSample;
		if (nSamples < 1) {
			Melder_throw ("No samples left to read");
		}
		autoSound me = Sound_createSimple (1, nSamples / samplingFrequency, samplingFrequency);
		fseek (f, skipNBytes, SEEK_SET);
		if (nBytesPerSample == 1 &&   unSigned) {
			u1read (me.peek(), f);
		} else if (nBytesPerSample == 1 && ! unSigned) {
			i1read (me.peek(), f);
		} else if (nBytesPerSample == 2 &&   unSigned) {
			u2read (me.peek(), f, littleEndian);
		} else if (nBytesPerSample == 2 && ! unSigned) {
			i2read (me.peek(), f, littleEndian);
		} else if (nBytesPerSample == 4 &&   unSigned) {
			u4read (me.peek(), f, littleEndian);
		} else if (nBytesPerSample == 4 && ! unSigned) {
			i4read (me.peek(), f, littleEndian);
		} else if (nBytesPerSample == 4 && strequ (format, "float")) {
			r4read (me.peek(), f);
		}
		f.close (file);
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not read from raw audio file ", MelderFile_messageName (file), ".");
	}
}

void Sound_writeToRawFile (Sound me, MelderFile file, const char *format, int littleEndian, int nBitsCoding, int unSigned) {
	try {
		long nClip = 0;
		autofile f = Melder_fopen (file, "wb");
		if (! format) {
			format = "integer";
		}
		if (nBitsCoding <= 0) {
			nBitsCoding = 16;
		}
		long nBytesPerSample = (nBitsCoding + 7) / 8;
		if (strequ (format, "float")) {
			nBytesPerSample = 4;
		}
		if (nBytesPerSample == 3 || nBytesPerSample > 4) {
			Melder_throw (L"number of bytes per sample should be 1, 2 or 4.");
		}
		if (nBytesPerSample == 1 &&   unSigned) {
			u1write (me, f, & nClip);
		} else if (nBytesPerSample == 1 && ! unSigned) {
			i1write (me, f, & nClip);
		} else if (nBytesPerSample == 2 &&   unSigned) {
			u2write (me, f, littleEndian, & nClip);
		} else if (nBytesPerSample == 2 && ! unSigned) {
			i2write (me, f, littleEndian, & nClip);
		} else if (nBytesPerSample == 4 &&   unSigned) {
			u4write (me, f, littleEndian, & nClip);
		} else if (nBytesPerSample == 4 && ! unSigned) {
			i4write (me, f, littleEndian, & nClip);
		} else if (nBytesPerSample == 4 && strequ (format, "float")) {
			r4write (me, f);
		}
		if (nClip > 0) Melder_warning (Melder_integer (nClip), L" from ", Melder_integer (my nx),
			                               L" samples have been clipped.\nAdvice: you could scale the amplitudes or save as a binary file.");
		if (feof (f) || ferror (f)) {
			Melder_throw ("Sound_writeToRawFile: not completed");
		}
		f.close (file);
	} catch (MelderError) {
		Melder_throw (me, ": saving as raw file not performed.");
	}
}

struct dialogic_adpcm {
	char code;
	short last, index;
	short step_size[49];
	short adjust[8];
};

static void dialogic_adpcm_init (struct dialogic_adpcm *adpcm) {
	short step_size[49] = {
		16, 17, 19, 21, 23, 25, 28, 31, 34, 37,
		41, 45, 50, 55, 60, 66, 73, 80, 88, 97,
		107, 118, 130, 143, 157, 173, 190, 209, 230, 253,
		279, 307, 337, 371, 408, 449, 494, 544, 598, 658,
		724, 796, 876, 963, 1060, 1166, 1282, 1411, 1552
	};
	short adjust[8] = { -1, -1, -1, -1, 2, 4, 6, 8 };

	adpcm -> last = 0;
	adpcm -> index = 0;
	for (long i = 0; i < 49; i++) {
		adpcm -> step_size[i] = step_size[i];
	}
	for (long i = 0; i <  8; i++) {
		adpcm ->    adjust[i] = adjust[i];
	}
}

/*
	The code is adapted from:
	Bob Edgar (), "PC Telephony - The complete guide to designing,
		building and programming systems using Dialogic and Related
		Hardware", 272-276.
*/
static float dialogic_adpcm_decode (struct dialogic_adpcm *adpcm) {
	float scale = 32767.0 / 32768.0 / 2048.0;

	// nibble = B3 B2 B1 B0 (4 lower bits)
	// d(n) = ss(n)*B2 + ss(n)/2 *B1 + ss(n)/4*B0 + ss(n)/8

	short ss = adpcm -> step_size[adpcm -> index];
	short e = ss / 8;
	if (adpcm -> code & 0x01) {
		e += ss / 4;
	}
	if (adpcm -> code & 0x02) {
		e += ss / 2;
	}
	if (adpcm -> code & 0x04) {
		e += ss;
	}

	// If B3==1 then d(n) = -d(n);

	short diff = (adpcm -> code & 0x08) ? -e : e;

	// x(n) = x(n-1)+d(n)

	short s = adpcm -> last + diff;
	if (s > 2048) {
		s = 2048;
	}
	if (s < -2048) {
		s = -2048;
	}
	adpcm -> last = s;

	// ss(n+1) = ss(n) * 1.1*M(L(n)) via lookup table

	adpcm -> index += adpcm -> adjust[adpcm -> code & 0x07];
	if (adpcm -> index <  0) {
		adpcm -> index = 0;
	}
	if (adpcm -> index > 48) {
		adpcm -> index = 48;
	}

	return scale * s;
}

Sound Sound_readFromDialogicADPCMFile (MelderFile file, double sampleRate) {
	try {
		autofile f = Melder_fopen (file, "rb");

		long filelength = MelderFile_length (file);
		if (filelength <= 0) {
			Melder_throw ("File is empty.");
		}

		// Two samples in each byte

		long numberOfSamples = 2 * filelength;
		if (numberOfSamples <= 0) {
			Melder_throw ("File too long");
		}
		autoSound me = Sound_createSimple (1, numberOfSamples / sampleRate, sampleRate);

		// Read all bytes and decode

		struct dialogic_adpcm adpcm;
		dialogic_adpcm_init (& adpcm);

		long n = 1;
		for (long i = 1; i <= filelength; i++) {
			unsigned char sc;
			fread (&sc, 1, 1, f);
			adpcm.code = (char) ( (sc >> 4) & 0x0f);
			my z[1][n++] = dialogic_adpcm_decode (& adpcm);
			adpcm.code = (char) (sc & 0x0f);
			my z[1][n++] = dialogic_adpcm_decode (& adpcm);
		}
		f.close (file);
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not read from Dialogic ADPCM file", MelderFile_messageName (file), ".");
	}
}

void Sound_preEmphasis (Sound me, double preEmphasisFrequency) {
	if (preEmphasisFrequency >= 0.5 / my dx) {
		return;    // above Nyquist?
	}

	double preEmphasis = exp (- 2.0 * NUMpi * preEmphasisFrequency * my dx);

	for (long channel = 1; channel <= my ny; channel++) {
		double *s = my z[channel];
		for (long i = my nx; i >= 2; i--) {
			s[i] -= preEmphasis * s[i - 1];
		}
	}
}

void Sound_deEmphasis (Sound me, double deEmphasisFrequency) {
	double deEmphasis = exp (- 2.0 * NUMpi * deEmphasisFrequency * my dx);
	for (long channel = 1; channel <= my ny; channel++) {
		double *s = my z[channel];
		for (long i = 2; i <= my nx; i++) {
			s[i] += deEmphasis * s[i - 1];
		}
	}
}

Sound Sound_createGaussian (double windowDuration, double samplingFrequency) {
	try {
		autoSound me = Sound_createSimple (1, windowDuration, samplingFrequency);
		double *s = my z[1];
		double imid = 0.5 * (my nx + 1), edge = exp (-12.0);
		for (long i = 1; i <= my nx; i++) {
			s[i] = (exp (-48.0 * (i - imid) * (i - imid) / (my nx + 1) / (my nx + 1)) - edge) / (1 - edge);
		}
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from Gaussian function.");
	}
}

Sound Sound_createHamming (double windowDuration, double samplingFrequency) {
	try {
		autoSound me = Sound_createSimple (1, windowDuration, samplingFrequency);
		double *s = my z[1];
		double p = 2 * NUMpi / (my nx - 1);
		for (long i = 1; i <= my nx; i++) {
			s[i] = 0.54 - 0.46 * cos ( (i - 1) * p);
		}
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from Hamming function.");
	};
}

static Sound Sound_create2 (double minimumTime, double maximumTime, double samplingFrequency) {
	return Sound_create (1, minimumTime, maximumTime, floor ( (maximumTime - minimumTime) * samplingFrequency + 0.5),
	                     1.0 / samplingFrequency, minimumTime + 0.5 / samplingFrequency);
}

/*
	Trig functions whose arguments form a linear sequence x = x1 + n.dx,
	for n=0,1,2,... are efficiently calculated by the following recurrence:
		cos(a+dx) = cos(a) - (alpha . cos(a) + beta . sin(a))
		sin(a+dx) = sin(a) - (alpha . sin(a) - beta . sin(a))
	where alpha and beta are precomputed coefficients
		alpha = 2 sin^2(dx/2) and beta = sin(dx)
	In this way aplha and beta do not loose significance if the increment
	dx is small.

*/

static Sound Sound_createToneComplex (double minimumTime, double maximumTime, double samplingFrequency,
                                      double firstFrequency, long numberOfComponents, double frequencyDistance,
                                      long mistunedComponent, double mistuningFraction, int scaleAmplitudes) {
	try {
		autoSound me = Sound_create2 (minimumTime, maximumTime, samplingFrequency);
		for (long j = 1; j <= numberOfComponents; j++) {
			double fraction = j == mistunedComponent ? mistuningFraction : 0;
			double w = 2 * NUMpi * (firstFrequency + (j - 1 + fraction) * frequencyDistance);
			double delta = w * my dx;
			double alpha = 2 * sin (delta / 2) * sin (delta / 2);
			double beta = sin (delta);
			double sint = sin (w * my x1);
			double cost = cos (w * my x1);
			my z[1][1] += sint;
			for (long i = 2; i <= my nx; i++) {
				double costd = cost - (alpha * cost + beta * sint);
				double sintd = sint - (alpha * sint - beta * cost);
				my z[1][i] += sintd;
				cost = costd; sint = sintd;
			}
		}
		if (scaleAmplitudes) {
			Vector_scale (me.peek(), 0.99996948);
		}
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from tone complex.");
	}
}


Sound Sound_createSimpleToneComplex (double minimumTime, double maximumTime, double samplingFrequency,
                                     double firstFrequency, long numberOfComponents, double frequencyDistance, int scaleAmplitudes) {
	if (firstFrequency + (numberOfComponents - 1) * frequencyDistance > samplingFrequency / 2) {
		Melder_warning (L"Sound_createSimpleToneComplex: frequency of (some) components too high.");
		numberOfComponents = 1.0 + (samplingFrequency / 2 - firstFrequency) / frequencyDistance;
	}
	return Sound_createToneComplex (minimumTime, maximumTime, samplingFrequency,
	                                firstFrequency, numberOfComponents, frequencyDistance, 0, 0, scaleAmplitudes);
}

Sound Sound_createMistunedHarmonicComplex (double minimumTime, double maximumTime, double samplingFrequency,
        double firstFrequency, long numberOfComponents, long mistunedComponent,
        double mistuningFraction, int scaleAmplitudes) {
	if (firstFrequency + (numberOfComponents - 1) * firstFrequency > samplingFrequency / 2) {
		Melder_warning (L"Sound_createMistunedHarmonicComplex: frequency of (some) components too high.");
		numberOfComponents = 1.0 + (samplingFrequency / 2 - firstFrequency) / firstFrequency;
	}
	if (mistunedComponent > numberOfComponents) {
		Melder_warning (L"Sound_createMistunedHarmonicComplex: mistuned component too high.");
	}
	return Sound_createToneComplex (minimumTime, maximumTime, samplingFrequency,
	                                firstFrequency, numberOfComponents, firstFrequency, mistunedComponent,
	                                mistuningFraction, scaleAmplitudes);
}

/*
	The gammachirp is a "chirp tone" with a  gamma-function envelope:
	f(t) = t^(n-1) exp (-2 pi b t) cos (2 pi f0 t + c ln (t) + p0)
	     = t^(n-1) exp (-2 pi b t) cos (phi(t))
	Instantaneous frequency f is defined as f = d phi(t) / dt / (2 pi)
	and so: f = f0 + c /(2 pi t)
	Irino: bandwidth = (frequency * (6.23e-6 * frequency + 93.39e-3) + 28.52)
*/
Sound Sound_createGammaTone (double minimumTime, double maximumTime, double samplingFrequency,
                             long gamma, double frequency, double bandwidth, double initialPhase, double addition,
                             int scaleAmplitudes) {
	try {
		autoSound me = Sound_create2 (minimumTime, maximumTime, samplingFrequency);
		for (long i = 1; i <= my nx; i++) {
			double t = (i - 0.5) * my dx;
			double f = frequency + addition / (NUM2pi * t);
			if (f > 0 && f < samplingFrequency / 2) my z[1][i] = pow (t, gamma - 1) *
				        exp (- NUM2pi * bandwidth * t) * cos (NUM2pi * frequency * t + addition * log (t) + initialPhase);
		}
		if (scaleAmplitudes) {
			Vector_scale (me.peek(), 0.99996948);
		}
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from gammatone function.");
	}
}

static void NUMgammatoneFilter4 (double *x, double *y, long n, double centre_frequency,
                                 double bandwidth, double samplingFrequency) {
	double a[5], b[9], dt = 1.0 / samplingFrequency, wt = NUMpi * centre_frequency * dt;
	double bt = 2 * NUMpi * bandwidth * dt, dt2 = dt * dt, dt4 = dt2 * dt2;

	Melder_assert (n > 0 && centre_frequency > 0 && bandwidth >= 0 &&
	               samplingFrequency > 0);

	/*
		The filter function is:
			H(z) = sum (i=0..4, a[i] z^-i) / sum (j=0..4, b[j] z^-j)
		Coefficients a & b according to:
		Slaney (1993), An efficient implementation of the Patterson-Holdsworth
		auditory filterbank, Apple Computer Technical Report 35, 41 pages.
		For the a's we have left out an overal scale factor of dt^4.
		This makes a[0] = 1.
	*/

	a[0] = dt4;
	a[1] = -4 * dt4 * cos (2 * wt) * exp (-    bt);
	a[2] =  6 * dt4 * cos (4 * wt) * exp (-2 * bt);
	a[3] = -4 * dt4 * cos (6 * wt) * exp (-3 * bt);
	a[4] =      dt4 * cos (8 * wt) * exp (-4 * bt);

	b[0] = 1;
	b[1] = -8 * cos (2 * wt)                           * exp (-    bt);
	b[2] = (16 + 12 * cos (4 * wt))                    * exp (-2 * bt);
	b[3] = (-48 * cos (2 * wt) - 8 * cos (6 * wt))     * exp (-3 * bt);
	b[4] = (36 + 32 * cos (4 * wt) + 2 * cos (8 * wt)) * exp (-4 * bt);
	b[5] = (-48 * cos (2 * wt) - 8 * cos (6 * wt))     * exp (-5 * bt);
	b[6] = (16 + 12 * cos (4 * wt))                    * exp (-6 * bt);
	b[7] = -8 * cos (2 * wt)                           * exp (-7 * bt);
	b[8] =                                               exp (-8 * bt);

	/*
		Calculate gain (= Abs (H(z); f=fc) and scale a[0-4] with it.
	*/

	double zr =  cos (2 * wt), zi = -sin (2 * wt);
	double dr = a[4], di = 0, tr, ti, nr, ni;

	for (long j = 1; j <= 4; j++) {
		tr = a[4 - j] + zr * dr - zi * di;
		ti = zi * dr + zr * di;
		dr = tr; di = ti;
	}

	dr = b[8];
	di = 0;
	for (long j = 1; j <= 8; j++) {
		nr = b[8 - j] + zr * dr - zi * di;
		ni = zi * dr + zr * di;
		dr = nr; di = ni;
	}

	double n2 = nr * nr + ni * ni;
	double gr = tr * nr + ti * ni;
	double gi = ti * nr - tr * ni;
	double gain = sqrt (gr * gr + gi * gi) / n2;

	for (long j = 0; j <= 4; j++) {
		a[j] /= gain;
	}

	if (Melder_debug == -1) {
		Melder_casual ("--gammatonefilter4--\nF = %ls, B = %ls, T = %ls\nGain = %ls",
		               Melder_double (centre_frequency), Melder_double (bandwidth),
		               Melder_double (dt), Melder_double (gain));
		for (long i = 0; i <= 4; i++) {
			Melder_casual ("a[%d] = %ls", i, Melder_double (a[i]));
		}
		for (long i = 0; i <= 8; i++) {
			Melder_casual ("b[%d] = %ls", i, Melder_double (b[i]));
		}
	}
	/*
		Perform the filtering. For the first 8 samples we must do some
		extra work.
	*/

	long n8 = n < 8 ? n : 8;
	for (long i = 1; i <= n8; i++) {
		y[i] = a[0] * x[i];
		if (i > 1) {
			y[i] += a[1] * x[i - 1] - b[1] * y[i - 1];
		} else {
			continue;
		}
		if (i > 2) {
			y[i] += a[2] * x[i - 2] - b[2] * y[i - 2];
		} else {
			continue;
		}
		if (i > 3) {
			y[i] += a[3] * x[i - 3] - b[3] * y[i - 3];
		} else {
			continue;
		}
		if (i > 4) {
			y[i] += a[4] * x[i - 4] - b[4] * y[i - 4];
		} else {
			continue;
		}
		if (i > 5) {
			y[i] -= b[5] * y[i - 5];
		} else {
			continue;
		}
		if (i > 6) {
			y[i] -= b[6] * y[i - 6];
		} else {
			continue;
		}
		if (i > 7) {
			y[i] -= b[7] * y[i - 7];
		}
	}

	for (long i = n8 + 1; i <= n; i++) {
		// y[i]  = a[0] * x[i];
		// y[i] += a[1] * x[i-1] + a[2] * x[i-2] + a[3] * x[i-3] + a[4] * x[i-4];
		// y[i] -= b[1] * y[i-1] + b[2] * y[i-2] + b[3] * y[i-3] + b[4] * y[i-4];
		// y[i] -= b[5] * y[i-5] + b[6] * y[i-6] + b[7] * y[i-7] + b[8] * y[i-8];
		y[i] = a[0] * x[i] + a[1] * x[i - 1] + a[2] * x[i - 2] + a[3] * x[i - 3] + a[4] * x[i - 4]
		       - b[1] * y[i - 1] - b[2] * y[i - 2] - b[3] * y[i - 3] - b[4] * y[i - 4]
		       - b[5] * y[i - 5] - b[6] * y[i - 6] - b[7] * y[i - 7] - b[8] * y[i - 8];
	}
}


Sound Sound_filterByGammaToneFilter4 (Sound me, double centre_frequency, double bandwidth) {
	try {
		if (centre_frequency <= 0) {
			Melder_throw ("Centre frequency must be positive.");
		}
		if (bandwidth < 0) {
			Melder_throw ("Bandwidth must be positive.");
		}

		autoSound thee = Sound_create (my ny, my xmin, my xmax, my nx, my dx, my x1);
		autoNUMvector<double> y (1, my nx);
		autoNUMvector<double> x (1, my nx);

		double fs = 1 / my dx;
		for (long channel = 1; channel <= my ny; channel++) {
			for (long i = 1; i <= my nx; i++) {
				x[i] = my z[channel][i];
			}

			NUMgammatoneFilter4 (x.peek(), y.peek(), my nx, centre_frequency, bandwidth, fs);

			for (long i = 1; i <= my nx; i++) {
				thy z[channel][i] = y[i];
			}
		}
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not filtered by gammatone filter4.");
	}
}

/*
Sound Sound_createShepardTone (double minimumTime, double maximumTime, double samplingFrequency,
	double baseFrequency, double frequencyShiftFraction, double maximumFrequency, double amplitudeRange)
{
	Sound me; long i, j, nComponents = 1 + log2 (maximumFrequency / 2 / baseFrequency);
	double lmin = pow (10, - amplitudeRange / 10);
	double twoPi = 2.0 * NUMpi, f = baseFrequency * (1 + frequencyShiftFraction);
	if (nComponents < 2) Melder_warning (L"Sound_createShepardTone: only 1 component.");
	Melder_casual ("Sound_createShepardTone: %ld components.", nComponents);
	if (! (me = Sound_create2 (minimumTime, maximumTime, samplingFrequency))) return NULL;

	for (j=1; j <= nComponents; j++)
	{
		double fj = f * pow (2, j-1), wj = twoPi * fj;
		double amplitude = lmin + (1 - lmin) *
			(1 - cos (twoPi * log (fj + 1) / log (maximumFrequency + 1))) / 2;
		for (i=1; i <= my nx; i++)
		{
			my z[1][i] += amplitude * sin (wj * (i - 0.5) * my dx);
		}
	}
	Vector_scale (me, 0.99996948);
	return me;
}
*/

Sound Sound_createShepardToneComplex (double minimumTime, double maximumTime,
                                      double samplingFrequency, double lowestFrequency, long numberOfComponents,
                                      double frequencyChange_st, double amplitudeRange, double octaveShiftFraction) {
	try {
		double highestFrequency = lowestFrequency * pow (2, numberOfComponents);
		double lmax_db = 0, lmin_db = lmax_db - fabs (amplitudeRange);

		if (highestFrequency > samplingFrequency / 2) Melder_throw ("The highest frequency you want to generate is "
			        "above the Nyquist frequency. Choose a larger value for \"Sampling frequency\", or lower values for "
			        "\"Number of components\" or \"Lowest frequency\".");
		if (octaveShiftFraction < 0 || octaveShiftFraction >= 1) Melder_throw ("Octave offset fraction "
			        "must be greater or equal zero and smaller than one.");
		double octaveTime, sweeptime;
		if (frequencyChange_st != 0) {
			octaveTime = 12 / fabs (frequencyChange_st);
			sweeptime = numberOfComponents * octaveTime;
		} else {
			octaveTime = sweeptime = 1e38;
		}
		autoSound me = Sound_create2 (minimumTime, maximumTime, samplingFrequency);

		double a = frequencyChange_st / 12;
		for (long i = 1; i <= numberOfComponents; i++) {
			double tswitch;
			double freqi = lowestFrequency * pow (2, i - 1 + octaveShiftFraction);
			double b1, b2;
			double phase1 = 0, phasejm1 = 0;

			/*
				The frequency is f(t) = lowestFrequency * 2^tone(t)
				The tone is parametrized with a straight line: tone(t) = a * t + b
				where a = frequencyChange_st / 12 and b depends on the component
				If frequencyChange_st >=0
					The tone rises until highest frequency at t=tswich, then falls to lowest and starts rising again.
					The slope is always the same. The offsets are b1 and b2 respectively.
					We count octaveShiftFraction as distance from tone base
				else if frequencyChange_st < 0
					The tone falls until the lowest frequency at t=tswich, then jumps to highest and starts falling again
					All tones start one octave higher as in rising case.
					We also count octaveShiftFraction down from this tone base.
				else
					No changes in frequency of the components.
				endif
			*/
			if (frequencyChange_st >= 0) {
				b1 = i - 1 + octaveShiftFraction; b2 = 0;
				tswitch = (numberOfComponents - b1) * octaveTime;
			} else {
				freqi *= 2;
				b1 = i - octaveShiftFraction; b2 = numberOfComponents;
				tswitch = b1 * octaveTime;
			}
			for (long j = 1; j <= my nx; j++) {
				double t = Sampled_indexToX (me.peek(), j);
				double tmod = fmod (t, sweeptime);
				double tone = tmod <= tswitch ? b1 + a * tmod : b2 + a * (tmod - tswitch);
				double f = lowestFrequency * pow (2, tone);
				/* double theta = 2 * NUMpi * log2 (f / lowestFrequency) / numberOfComponents; */
				double theta = 2 * NUMpi * tone / numberOfComponents;
				double level = pow (10, (lmin_db + (lmax_db - lmin_db) * (1 - cos (theta)) / 2) / 20);
				double phasej = phasejm1 + 2 * NUMpi * f * my dx; /* Integrate 2*pi*f(t) */

				if (j == 1) {
					phase1 = phasej;    // phase1 = j == 1 ? phasej : phase1;
				}
				my z[1][j] += level * sin (phasej - phase1); // si
				phasejm1 = phasej;
			}
		}
		Vector_scale (me.peek(), 0.99996948);
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from Shepard tone complex.");
	}
}

/* can be implemented more efficiently with sin recurrence? */
/* amplitude(f) = min + (1-min)*(1-cos(2*pi*(ln(f/f1) / ln(fn/f1)))/2 */
Sound Sound_createShepardTone (double minimumTime, double maximumTime,
                               double samplingFrequency, double lowestFrequency, long numberOfComponents,
                               double frequencyChange_st, double amplitudeRange) {
	try {
		double scale = pow (2, numberOfComponents);
		double maximumFrequency = lowestFrequency * scale;
		double lmin = pow (10, - amplitudeRange / 10), twoPi = 2.0 * NUMpi;
		double ln2t0 = log (2) * frequencyChange_st / 12;
		double lnf1 = log (lowestFrequency + 1);
		double amplarg = twoPi / log ( (maximumFrequency + 1) /
		                               (lowestFrequency + 1));

		if (lowestFrequency > samplingFrequency / 2) Melder_throw
			("Sound_createShepardTone: lowest frequency too high.");
		if (maximumFrequency > samplingFrequency / 2) Melder_throw
			("Sound_createShepardTone: frequency of highest component too high.");
		autoSound me = Sound_create2 (minimumTime, maximumTime, samplingFrequency);

		for (long i = 1; i <= my nx; i++) {
			double argt, t = (i - 0.5) * my dx, ft = lowestFrequency;
			if (frequencyChange_st != 0) {
				double expt = exp (ln2t0 * t);
				argt = twoPi * lowestFrequency * (expt - 1) / ln2t0;
				ft *= expt;
			} else {
				argt = twoPi * ft * t;
			}
			for (long j = 1; j <= numberOfComponents; j++) {
				while (ft >= maximumFrequency) {
					ft /= scale;
					argt /= scale;
				}
				//amplitude = lmin + (1 - lmin) * (1 - cos (twoPi * log (ft + 1) / log (maximumFrequency + 1))) / 2;
				double amplitude = lmin + (1 - lmin) * (1 - cos (amplarg * (log (ft + 1) - lnf1))) / 2;
				my z[1][i] += amplitude * sin (argt);
				ft *= 2; argt *= 2;
			}
		}
		Vector_scale (me.peek(), 0.99996948);
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from Shepard tone.");
	}
}

Sound Sound_createPattersonWightmanTone (double minimumTime, double maximumTime, double samplingFrequency,
        double baseFrequency, double frequencyShiftRatio, long numberOfComponents) {
	try {
		if ( (numberOfComponents - 1 + frequencyShiftRatio) * baseFrequency >  samplingFrequency / 2) Melder_throw
			("Frequency of one or more components too large.");
		autoSound me = Sound_create2 (minimumTime, maximumTime, samplingFrequency);
		double w0 = NUM2pi * baseFrequency;
		for (long i = 1; i <= my nx; i++) {
			double a = 0, t = (i - 0.5) * my dx;
			for (long j = 1; j <= numberOfComponents; j++) {
				a += sin ( (j + frequencyShiftRatio) * w0 * t);
			}
			my z[1][i] = a;
		}
		Vector_scale (me.peek(), 0.99996948);
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from Patterson Wightman tone.");
	}
}

Sound Sound_createPlompTone (double minimumTime, double maximumTime, double samplingFrequency,
                             double baseFrequency, double frequencyFraction, long m) {
	try {
		double w1 = NUM2pi * (1 - frequencyFraction) * baseFrequency;
		double w2 = NUM2pi * (1 + frequencyFraction) * baseFrequency;
		if (12 * (1 + frequencyFraction) * baseFrequency >  samplingFrequency / 2) Melder_throw
			("Sound_createPlompTone: frequency of one or more components too large.");
		autoSound me = Sound_create2 (minimumTime, maximumTime, samplingFrequency);
		for (long i = 1; i <= my nx; i++) {
			double a = 0, t = (i - 0.5) * my dx;
			for (long j = 1; j <= m; j++) {
				a += sin (j * w1 * t);
			}
			for (long j  = m + 1; j <= 12; j++) {
				a += sin (j * w2 * t);
			}
			my z[1][i] = a;
		}
		Vector_scale (me.peek(), 0.99996948);
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from Plomp tone.");
	}
}

void Sounds_multiply (Sound me, Sound thee) {
	long n = my nx < thy nx ? my nx : thy nx;
	double *s1 = my z[1], *s2 = thy z[1];
	for (long i = 1; i <= n; i++) {
		s1[i] *= s2[i];
	}
}


double Sound_power (Sound me) {
	double e = 0, *amplitude = my z[1];
	for (long i = 1; i <= my nx; i++) {
		e += amplitude[i] * amplitude[i];
	}
	return sqrt (e) * my dx / (my xmax - my xmin);
}

double Sound_correlateParts (Sound me, double tx, double ty, double duration) {
	if (ty < tx) {
		double t = tx;
		tx = ty;
		ty = t;
	}
	long nbx = Sampled_xToNearestIndex (me, tx);
	long nby = Sampled_xToNearestIndex (me, ty);
	long ney = Sampled_xToNearestIndex (me, ty + duration);

	long increment = 0, decrement = 0;
	if (nbx < 1) {
		increment = 1 - nbx;
	}
	if (ney > my nx) {
		decrement = ney - my nx;
	}

	long ns = duration / my dx - increment - decrement;
	if (ns < 1) {
		return 0;
	}

	double *x = & my z[1][nbx + increment - 1];
	double *y = & my z[1][nby + increment - 1];
	double xm = 0, ym = 0, sxx = 0, syy = 0, sxy = 0;
	for (long i = 1; i <= ns; i++) {
		xm += x[i];
		ym += y[i];
	}
	xm /= ns; ym /= ns;
	for (long i = 1; i <= ns; i++) {
		double xt = x[i] - xm, yt = y[i] - ym;
		sxx += xt * xt; syy += yt * yt; sxy += xt * yt;
	}
	double denum = sxx * syy;
	double rxy = denum > 0 ? sxy / sqrt (denum) : 0;
	return rxy;
}

void Sound_localMean (Sound me, double fromTime, double toTime, double *mean) {
	long n1 = Sampled_xToNearestIndex (me, fromTime);
	long n2 = Sampled_xToNearestIndex (me, toTime);
	double *s = my z[1];
	*mean = 0;
	if (fromTime > toTime) {
		return;
	}
	if (n1 < 1) {
		n1 = 1;
	}
	if (n2 > my nx) {
		n2 = my nx;
	}
	for (long i = n1; i <= n2; i++) {
		*mean += s[i];
	}
	*mean /= n2 - n1 + 1;
}

void Sound_localPeak (Sound me, double fromTime, double toTime, double ref, double *peak) {
	long n1 = Sampled_xToNearestIndex (me, fromTime);
	long n2 = Sampled_xToNearestIndex (me, toTime);
	double *s = my z[1];
	*peak = -1e38;
	if (fromTime > toTime) {
		return;
	}
	if (n1 < 1) {
		n1 = 1;
	}
	if (n2 > my nx) {
		n2 = my nx;
	}
	for (long i = n1; i <= n2; i++) {
		double ds = fabs (s[i] - ref);
		if (ds > *peak) {
			*peak = ds;
		}
	}
}

void Sound_into_Sound (Sound me, Sound to, double startTime) {
	long index = Sampled_xToNearestIndex (me, startTime);
	for (long i = 1; i <= to -> nx; i++) {
		long j = index - 1 + i;
		to -> z[1][i] = j < 1 || j > my nx ? 0 : my z[1][j];
	}
}

/*
IntervalTier Sound_PointProcess_to_IntervalTier (Sound me, PointProcess thee, double window);
IntervalTier Sound_PointProcess_to_IntervalTier (Sound me, PointProcess thee, double window)
{
	IntervalTier him;
	TextInterval interval;
	double t1, t2, t, window2 = window / 2;
	long i;

	him = IntervalTier_create (my xmin, my xmax);
	if (him == NULL) return NULL;

	t1 = thy t[1] - window2;
	if (t1 < my xmin) t1 = my xmin;
	t2 = t1 + window2;
	if (t2 > my xmax) t2 = my xmax;
	interval = TextInterval_create (t1, t2, "yes");
	if (interval == NULL ||
		! Collection_addItem (his intervals, interval)) goto end;

	for (i = 2; i <= thy nt; i++)
	{
		t =  thy t[i];

		if (t  <= t2)
		{
			long index = his points -> size;
			RealPoint point = his points -> item[index];
			t2 = t + window2;
			if (t2 > my xmax) t2 = my xmax;
			point -> value = t2;
		}
		else
		{
			t2 = t + window2;
			if (t2 > my xmax) t2 = my xmax;
			if (! RealTier_addPoint (him, t, t2)) goto end;
		}
	}

end:
	if (Melder_hasError()) forget (him);
	return him;
}
*/

void Sound_overwritePart (Sound me, double t1, double t2, Sound thee, double t3) {
	if (my dx != thy dx) {
		Melder_throw ("Sample rates must be equal.");
	}

	if (t1 == 0) {
		t1 =  my xmin;
	}
	if (t2 == 0) {
		t2 =  my xmax;
	}

	long i1 = Sampled_xToHighIndex (me, t1);
	long i2 = Sampled_xToLowIndex (me, t2);
	if (i1 > i2 || i2 > my nx || i1 < 1) Melder_throw
		("Times of part to be overwritten must be within the sound.");

	if (t3 == 0) {
		t3 = thy xmin;
	}
	long i3 = Sampled_xToHighIndex (thee, t3);
	long i4 = Sampled_xToLowIndex (thee, t3 + t2 - t1);
	if (i4 > thy nx || i3 < 1) {
		Melder_throw ("Not enough samples to be copied.");
	}
	if (i4 - i3 != i2 - i1) {
		Melder_throw ("Error i4 - i3 != i2 - i1.");
	}

	for (long i = i1; i <= i2; i++) {
		my z[1][i] = thy z[1][i - i1 + i3];
	}
}

void Sound_filter_part_formula (Sound me, double t1, double t2, const wchar_t *formula, Interpreter interpreter) {
	try {
		autoSound part = Sound_extractPart (me, t1, t2, kSound_windowShape_RECTANGULAR, 1, 1);
		autoSpectrum spec = Sound_to_Spectrum (part.peek(), TRUE);
		Matrix_formula ( (Matrix) spec.peek(), formula, interpreter, 0);
		autoSound filtered = Spectrum_to_Sound (spec.peek());

		// Overwrite part between t1 and t2 of original with the filtered signal */

		Sound_overwritePart (me, t1, t2, filtered.peek(), 0);
	} catch (MelderError) {
		Melder_throw (me, ": part not filtered by formula.");
	}
}

/*
   First approximation on the basis of differences in the sampled signal.
   The underlying analog signal still could have jumps undetected by this algorithm.
    We could get a better approximation by first upsampling the signal.
*/
PointProcess Sound_to_PointProcess_getJumps (Sound me, double minimumJump, double dt) {
	try {
		autoPointProcess thee = PointProcess_create (my xmin, my xmax, 10);
		long i = 1, dtn = dt / my dx;
		if (dtn < 1) {
			dtn = 1;
		}
		double *s = my z[1];
		while (i < my nx) {
			long j = i + 1, step = 1;
			while (j <= i + dtn && j <= my nx) {
				if (fabs (s[i] - s[j]) > minimumJump) {
					double t = Sampled_indexToX (me, i);
					PointProcess_addPoint (thee.peek(), t);
					step = j - i + 1; break;
				}
				j++;
			}
			i += step;
		}
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw (me, ": no PointProcess created.");
	}
}

/* Internal pitch representation in semitones */
Sound Sound_and_Pitch_changeSpeaker (Sound me, Pitch him,
                                     double formantMultiplier, // > 0
                                     double pitchMultiplier, // > 0
                                     double pitchRangeMultiplier, // any number
                                     double durationMultiplier) { // > 0
	try {
		double samplingFrequency_old = 1 / my dx;

		if (my xmin != his xmin || my xmax != his xmax) Melder_throw
			("The Pitch and the Sound object must have the same start and end times.");

		autoSound sound = Data_copy (me);
		Vector_subtractMean (sound.peek());

		if (formantMultiplier != 1) {
			// Shift all frequencies (inclusive pitch!) */
			Sound_overrideSamplingFrequency (sound.peek(), samplingFrequency_old * formantMultiplier);
		}

		autoPitch pitch = Data_copy (him);
		Pitch_scaleDuration (pitch.peek(), 1 / formantMultiplier); //
		Pitch_scalePitch (pitch.peek(), formantMultiplier);

		autoPointProcess pulses = Sound_Pitch_to_PointProcess_cc (sound.peek(), pitch.peek());
		autoPitchTier pitchTier = Pitch_to_PitchTier (pitch.peek());

		double median = Pitch_getQuantile (pitch.peek(), 0, 0, 0.5, kPitch_unit_HERTZ);
		if (median != 0 && median != NUMundefined) {
			/* Incorporate pitch shift from overriding the sampling frequency */
			PitchTier_multiplyFrequencies (pitchTier.peek(), sound -> xmin, sound -> xmax, pitchMultiplier / formantMultiplier);
			PitchTier_modifyExcursionRange (pitchTier.peek(), sound -> xmin, sound -> xmax, pitchRangeMultiplier, median);
		} else if (pitchMultiplier != 1) {
			Melder_warning (L"Pitch has not been changed because the sound was entirely voiceless.");
		}
		autoDurationTier duration = DurationTier_create (my xmin, my xmax);
		RealTier_addPoint (duration.peek(), (my xmin + my xmax) / 2, formantMultiplier * durationMultiplier);

		autoSound thee = Sound_Point_Pitch_Duration_to_Sound (sound.peek(), pulses.peek(), pitchTier.peek(), duration.peek(), MAX_T);

		// Resample to the original sampling frequency

		if (formantMultiplier != 1) {
			thee.reset (Sound_resample (thee.peek(), samplingFrequency_old, 10));
		}
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from Pitch & Sound.");
	}
}

Sound Sound_changeSpeaker (Sound me, double pitchMin, double pitchMax,
                           double formantMultiplier, // > 0
                           double pitchMultiplier, // > 0
                           double pitchRangeMultiplier, // any number
                           double durationMultiplier) { // > 0
	try {
		autoPitch pitch = Sound_to_Pitch (me, 0.8 / pitchMin, pitchMin, pitchMax);
		autoSound thee = Sound_and_Pitch_changeSpeaker (me, pitch.peek(), formantMultiplier, pitchMultiplier, pitchRangeMultiplier, durationMultiplier);
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw (me, ": speaker not changed.");
	}
}

TextGrid Sound_to_TextGrid_detectSilences (Sound me, double minPitch, double timeStep,
	double silenceThreshold, double minSilenceDuration, double minSoundingDuration,
	const wchar_t *silentLabel, const wchar_t *soundingLabel) {
	try {
		int subtractMeanPressure = 1;
		autoIntensity thee = Sound_to_Intensity (me, minPitch, timeStep, subtractMeanPressure);
		autoTextGrid him = Intensity_to_TextGrid_detectSilences (thee.peek(), silenceThreshold, minSilenceDuration, minSoundingDuration, silentLabel, soundingLabel);
		return him.transfer();
	} catch (MelderError) {
		Melder_throw (me, ": no TextGrid with silences created.");
	}
}

void Sound_getStartAndEndTimesOfSounding (Sound me, double minPitch, double timeStep,
	double silenceThreshold, double minSilenceDuration, double minSoundingDuration, double *t1, double *t2) {
	try {
		const wchar_t *silentLabel = L"-", *soundingLabel = L"+";
		autoTextGrid dbs = Sound_to_TextGrid_detectSilences (me, minPitch, timeStep, silenceThreshold,
			minSilenceDuration, minSoundingDuration, silentLabel, soundingLabel);
		IntervalTier itier = (IntervalTier) dbs -> tiers -> item[1];
		TextInterval ti = (TextInterval) itier -> intervals -> item[1];
		*t1 = my xmin;
		if (Melder_wcsequ (ti -> text, silentLabel)) {
			*t1 = ti -> xmax;
		}
		*t2 = my xmax;
		ti = (TextInterval) itier -> intervals -> item[itier -> intervals -> size];
		if (Melder_wcsequ (ti -> text, silentLabel)) {
			*t2 = ti -> xmin;
		}
	} catch (MelderError) {
		Melder_throw ("Sounding times not found.");
	}
}

Sound Sound_and_IntervalTier_cutPartsMatchingLabel (Sound me, IntervalTier thee, const wchar_t *match) {
    try {
        // count samples of the trimmed sound
        long ixmin, ixmax, numberOfSamples = 0, previous_ixmax = 0;
		double xmin = my xmin; // start time of output sound is start time of input sound
        for (long iint = 1; iint <= thy intervals -> size; iint++) {
            TextInterval ti = (TextInterval) thy intervals -> item[iint];
            if (! Melder_wcsequ (ti -> text, match)) {
                numberOfSamples += Sampled_getWindowSamples (me, ti -> xmin, ti -> xmax, &ixmin, &ixmax);
                // if two contiguous intervals have to be copied then the last sample of previous interval
                // and first sample of current interval might sometimes be equal
				if (ixmin == previous_ixmax) {
					 --numberOfSamples;
				}
				previous_ixmax = ixmax;
			} else { // matches label
				if (iint == 1) { // Start time of output sound is end time of first interval
					xmin = ti -> xmax;
				}
            }
        }
        // Now copy the parts. The output sound starts at xmin
        autoSound him = Sound_create (my ny, xmin, xmin + numberOfSamples * my dx, numberOfSamples, my dx, xmin + 0.5 * my dx);
        numberOfSamples = 0; previous_ixmax = 0;
        for (long iint = 1; iint <= thy intervals -> size; iint++) {
            TextInterval ti = (TextInterval) thy intervals -> item[iint];
            if (! Melder_wcsequ (ti -> text, match)) {
				long ipos;
                Sampled_getWindowSamples (me, ti -> xmin, ti -> xmax, &ixmin, &ixmax);
				if (ixmin == previous_ixmax) {
					ixmin++;
				}
				previous_ixmax = ixmax;
                for (long ichan = 1; ichan <= my ny; ichan++) {
                    ipos = numberOfSamples + 1;
                    for (long i = ixmin; i <= ixmax; i++, ipos++) {
                        his z[ichan][ipos] = my z[ichan][i];
                    }
                }
                numberOfSamples = --ipos;
            }
        }
        Melder_assert (numberOfSamples == his nx);
        return him.transfer();
    } catch (MelderError) {
        Melder_throw (me, ": intervals not trimmed.");
    }
}

Sound Sound_trimSilences (Sound me, double trimDuration, bool onlyAtStartAndEnd, double minPitch, double timeStep, double silenceThreshold, double minSilenceDuration, double minSoundingDuration, TextGrid *tg, const wchar_t *trimLabel) {
    try {
        if (my ny > 1) {
            Melder_throw ("The sound must be a mono sound.");
        }
        const wchar_t *silentLabel = L"silent", *soundingLabel = L"sounding";
        const wchar_t *copyLabel = L"";
        autoTextGrid dbs = Sound_to_TextGrid_detectSilences (me, minPitch, timeStep, silenceThreshold,
            minSilenceDuration, minSoundingDuration, silentLabel, soundingLabel);
        autoIntervalTier itg = (IntervalTier) Data_copy ((IntervalTier) dbs -> tiers -> item[1]);
        IntervalTier itier = (IntervalTier) dbs -> tiers -> item[1];
        for (long iint = 1; iint <= itier -> intervals -> size; iint++) {
            TextInterval ti = (TextInterval) itier -> intervals -> item[iint];
            TextInterval ati = (TextInterval) itg -> intervals -> item[iint];
            double duration = ti -> xmax - ti -> xmin;
            if (duration > trimDuration && Melder_wcsequ (ti -> text, silentLabel)) { // silent
				const wchar_t * label = trimLabel;
                if (iint == 1) { // first is special
                    double trim_t = ti -> xmax - trimDuration;
                    IntervalTier_moveBoundary (itg.peek(), iint, false, trim_t);
                } else if (iint == itier -> intervals -> size) { // last is special
                    double trim_t = ti -> xmin + trimDuration;
                    IntervalTier_moveBoundary (itg.peek(), iint, true, trim_t);
                } else {
					if (onlyAtStartAndEnd) {
						label = ati -> text;
					} else {
                    	double trim_t = ti -> xmin + 0.5 * trimDuration;
						IntervalTier_moveBoundary (itg.peek(), iint, true, trim_t);
                    	trim_t = ti -> xmax - 0.5 * trimDuration;
                    	IntervalTier_moveBoundary (itg.peek(), iint, false, trim_t);
					}
                }
                TextInterval_setText (ati, label);
            } else { // sounding
                TextInterval_setText (ati, copyLabel);
            }
        }
        autoSound thee = Sound_and_IntervalTier_cutPartsMatchingLabel (me, itg.peek(), trimLabel);
        if (tg != NULL) {
			TextGrid_addTier (dbs.peek(), itg.transfer());
            *tg = dbs.transfer();
        }
        return thee.transfer();
    } catch (MelderError) {
        Melder_throw (me, ": silences not trimmed.");
    }
}

Sound Sound_trimSilencesAtStartAndEnd (Sound me, double trimDuration, double minPitch, double timeStep,
	double silenceThreshold, double minSilenceDuration, double minSoundingDuration, double *t1, double *t2) {
	try {
		TextGrid tg;
		autoSound thee = Sound_trimSilences (me, trimDuration, true, minPitch, timeStep, silenceThreshold, minSilenceDuration, minSoundingDuration, &tg, L"trimmed");
		autoTextGrid atg = tg;
		IntervalTier trim = (IntervalTier) tg -> tiers -> item[2];
		TextInterval ti1 = (TextInterval) trim -> intervals -> item[1];
		*t1 = my xmin;
		if (Melder_wcsequ (ti1 -> text, L"trimmed")) {
			*t1 = ti1 -> xmax;
		}
		TextInterval ti2 = (TextInterval) trim -> intervals -> item[trim -> intervals -> size];
		*t2 = my xmax;
		if (Melder_wcsequ (ti2 -> text, L"trimmed")) {
			*t2 = ti2 -> xmin;
		}
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw (me, ": silences not trimmed.");
	}
}

/*  Compatibility with old Sound(&pitch)_changeGender  ***********************************/

static void PitchTier_modifyRange_old (PitchTier me, double tmin, double tmax, double factor, double fmid) {
	for (long i = 1; i <= my points -> size; i ++) {
		RealPoint point = (RealPoint) my points -> item [i];
		double f = point -> value;
		if (point -> number < tmin || point -> number > tmax) {
			continue;
		}
		f = fmid + (f - fmid) * factor;
		point -> value = f < 0 ? 0 : f;
	}
}

static Pitch Pitch_scaleTime_old (Pitch me, double scaleFactor) {
	try {
		double dx = my dx, x1 = my x1, xmax = my xmax;
		if (scaleFactor != 1) {
			dx = my dx * scaleFactor;
			x1 = my xmin + 0.5 * dx;
			xmax = my xmin + my nx * dx;
		}
		autoPitch thee = Pitch_create (my xmin, xmax, my nx, dx, x1, my ceiling, 2);

		for (long i = 1; i <= my nx; i++) {
			double f = my frame[i].candidate[1].frequency;
			thy frame[i].candidate[1].strength = my frame[i].candidate[1].strength;
			f /= scaleFactor;
			if (f < my ceiling) {
				thy frame[i].candidate[1].frequency = f;
			}
		}
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw ("Pitch not scaled.");
	}
}

Sound Sound_and_Pitch_changeGender_old (Sound me, Pitch him, double formantRatio, double new_pitch, double pitchRangeFactor, double durationFactor) {
	try {
		double samplingFrequency_old = 1 / my dx;

		if (my ny > 1) {
			Melder_throw ("Change Gender works only on mono sounds.");
		}
		if (my xmin != his xmin || my xmax != his xmax) Melder_throw
			("The Pitch and the Sound object must have the same starting times and finishing times.");
		if (new_pitch < 0) {
			Melder_throw ("The new pitch median must not be negative.");
		}

		autoSound sound = Data_copy (me);
		Vector_subtractMean (sound.peek());

		if (formantRatio != 1) {
			// Shift all frequencies (inclusive pitch!)
			Sound_overrideSamplingFrequency (sound.peek(), samplingFrequency_old * formantRatio);
		}

		autoPitch pitch = Pitch_scaleTime_old (him, 1 / formantRatio);
		autoPointProcess pulses = Sound_Pitch_to_PointProcess_cc (sound.peek(), pitch.peek());
		autoPitchTier pitchTier = Pitch_to_PitchTier (pitch.peek());

		double median = Pitch_getQuantile (pitch.peek(), 0, 0, 0.5, kPitch_unit_HERTZ);
		if (median != 0 && median != NUMundefined) {
			// Incorporate pitch shift from overriding the sampling frequency
			if (new_pitch == 0) {
				new_pitch = median / formantRatio;
			}
			double factor = new_pitch / median;
			PitchTier_multiplyFrequencies (pitchTier.peek(), sound -> xmin, sound -> xmax, factor);
			PitchTier_modifyRange_old (pitchTier.peek(), sound -> xmin, sound -> xmax, pitchRangeFactor, new_pitch);
		} else {
			Melder_warning (L"There were no voiced segments found.");
		}
		autoDurationTier duration = DurationTier_create (my xmin, my xmax);
		RealTier_addPoint (duration.peek(), (my xmin + my xmax) / 2, formantRatio * durationFactor);

		autoSound thee = Sound_Point_Pitch_Duration_to_Sound (sound.peek(), pulses.peek(), pitchTier.peek(),
		                 duration.peek(), 1.25 / Pitch_getMinimum (pitch.peek(), 0.0, 0.0, kPitch_unit_HERTZ, false));

		// Resample to the original sampling frequency

		if (formantRatio != 1) {
			thee.reset (Sound_resample (thee.peek(), samplingFrequency_old, 10));
		}
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from Pitch & Sound.");
	}
}

Sound Sound_changeGender_old (Sound me, double fmin, double fmax, double formantRatio,
                              double new_pitch, double pitchRangeFactor, double durationFactor) {
	try {
		autoPitch pitch = Sound_to_Pitch (me, 0.8 / fmin, fmin, fmax);
		autoSound thee = Sound_and_Pitch_changeGender_old (me, pitch.peek(), formantRatio,
		                 new_pitch, pitchRangeFactor, durationFactor);
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created for gender change.");
	}
}

/*  End of compatibility with Sound_changeGender and Sound_and_Pitch_changeGender ***********************************/

/* Draw a sound vertically, from bottom to top */
void Sound_draw_btlr (Sound me, Graphics g, double tmin, double tmax, double amin, double amax, int direction, int garnish) {
	double xmin, xmax, ymin, ymax;

	if (tmin == tmax) {
		tmin = my xmin; tmax = my xmax;
	}
	long itmin, itmax;
	Matrix_getWindowSamplesX (me, tmin, tmax, &itmin, &itmax);
	if (amin == amax) {
		Matrix_getWindowExtrema (me, itmin, itmax, 1, my ny, &amin, &amax);
		if (amin == amax) {
			amin -= 1.0; amax += 1.0;
		}
	}
	/* In bottom-to-top-drawing the maximum amplitude is on the left, minimum on the right */
	if (direction == FROM_BOTTOM_TO_TOP) {
		xmin = amax; xmax = amin; ymin = tmin; ymax = tmax;
	} else if (direction == FROM_TOP_TO_BOTTOM) {
		xmin = amin; xmax = amax; ymin = tmax; ymax = tmin;
	} else if (direction == FROM_RIGHT_TO_LEFT) {
		xmin = tmax; xmax = tmin; ymin = amin; ymax = amax;
	} else { //if (direction == FROM_LEFT_TO_RIGHT)
		xmin = tmin; xmax = tmax; ymin = amin; ymax = amax;
	}
	Graphics_setWindow (g, xmin, xmax, ymin, ymax);
	double a1 = my z[1][itmin];
	double t1 = Sampled_indexToX (me, itmin);
	for (long it = itmin + 1; it <= itmax; it++) {
		double t2 = Sampled_indexToX (me, it);
		double a2 = my z[1][it];
		if (direction == FROM_BOTTOM_TO_TOP || direction == FROM_TOP_TO_BOTTOM) {
			Graphics_line (g, a1, t1, a2, t2);
		} else {
			Graphics_line (g, t1, a1, t2, a2);
		}
		a1 = a2; t1 = t2;
	}
	if (garnish) {
		if (direction == FROM_BOTTOM_TO_TOP) {
			if (amin * amax < 0) {
				Graphics_markBottom (g, 0, 0, 1, 1, NULL);
			}
		} else if (direction == FROM_TOP_TO_BOTTOM) {
			if (amin * amax < 0) {
				Graphics_markTop (g, 0, 0, 1, 1, NULL);
			}
		} else if (direction == FROM_RIGHT_TO_LEFT) {
			if (amin * amax < 0) {
				Graphics_markRight (g, 0, 0, 1, 1, NULL);
			}
		} else { //if (direction == FROM_LEFT_TO_RIGHT)
			if (amin * amax < 0) {
				Graphics_markLeft (g, 0, 0, 1, 1, NULL);
			}
		}
		Graphics_rectangle (g, xmin, xmax, ymin, ymax);
	}
}

void Sound_fade (Sound me, int channel, double t, double fadeTime, int inout, int fadeGlobal) {
	long numberOfSamples = fabs (fadeTime) / my dx;
	double t1 = t, t2 = t1 + fadeTime;
	const wchar_t *fade_inout = inout > 0 ? L"out" : L"in";
	if (channel < 0 || channel > my ny) {
		Melder_throw ("Invalid channel number.");
	}
	if (t > my xmax) {
		t = my xmax;
		if (inout <= 0) { // fade in
			Melder_warning (L"The start time of the fade-in is after the end time of the sound. The fade-in will not happen.");
			return;
		}
	} else if (t < my xmin) {
		t = my xmin;
		if (inout > 0) { // fade  out
			Melder_warning (L"The start time of the fade-out is before the start time of the sound. The fade-out will not happen.");
			return;
		}
	}
	if (fadeTime < 0) {
		t1 = t + fadeTime; t2 = t;
	} else if (fadeTime > 0) {
		t1 = t; t2 = t + fadeTime;
	} else {
		Melder_warning (L"You have given a \"Fade time\" of zero seconds. The fade-", fade_inout,
		                L"will not happen.");
		return;
	}
	long i0 = 0, iystart, iyend;
	if (channel == 0) { // all
		iystart = 1; iyend = my ny;
	} else {
		iystart = iyend = channel;
	}

	long istart = Sampled_xToNearestIndex (me, t1);
	if (istart < 1) {
		istart = 1;
	}
	if (istart >= my nx) {
		Melder_warning (L"The part to fade ", fade_inout, L" lies after the end time of the sound. The fade-",  fade_inout, L" will not happen.");
		return;
	}
	long iend = Sampled_xToNearestIndex (me, t2);
	if (iend <= 1) {
		Melder_warning (L"The part to fade ", fade_inout, L" lies before the start time of the sound. Fade-", fade_inout, L" will be incomplete.");
		return;
	}
	if (iend > my nx) {
		iend = my nx;
	}
	if (iend - istart + 1 >= numberOfSamples) {
		numberOfSamples = iend - istart + 1;
	} else {
		// If the start of the fade is before xmin, arrange starting phase.
		// The end of the fade after xmax presents no problems (i0 = 0).
		if (fadeTime < 0) {
			i0 = numberOfSamples - (iend - istart + 1);
		}
		Melder_warning (L"The fade time is larger than the part of the sound to fade ", fade_inout, L". Fade-", fade_inout, L" will be incomplete.");
	}
	for (long ichannel = iystart; ichannel <= iyend; ichannel++) {
		for (long i = istart; i <= iend; i++) {
			double cosp = cos (NUMpi * (i0 + i - istart) / (numberOfSamples - 1));
			if (inout <= 0) {
				cosp = -cosp;    // fade-in
			}
			my z[ichannel][i] *= 0.5 * (1 + cosp);
		}
		if (fadeGlobal) {
			if (inout <= 0) {
				for (long i = 1; i < istart; i++) {
					my z[ichannel][i] = 0;
				}
			} else {
				for (long i = iend; i < my nx; i++) {
					my z[ichannel][i] = 0;
				}
			}
		}
	}
}

/* 1; rect 2:hamming 3: bartlet 4: welch 5: hanning 6:gaussian */
Sound Sound_createFromWindowFunction (double windowDuration, double samplingFrequency, int windowType) {
	try {
		autoSound me = Sound_createSimple (1, windowDuration, samplingFrequency);

		for (long i = 1; i <= my nx; i ++) {
			double phase = (my x1 + (i - 1) * my dx) / windowDuration;
			double value;
			switch (windowType) {
				case 1:
					value = 1.0;
					break;
				case 2: /* Hamming */
					value = 0.54 - 0.46 * cos (2.0 * NUMpi * phase);
					break;
				case 3: /* Bartlett */
					value = 1.0 - fabs ( (2.0 * phase - 1.0));
					break;
				case 4: /* Welch */
					value = 1.0 - (2.0 * phase - 1.0) * (2.0 * phase - 1.0);
					break;
				case 5: /* Hanning */
					value = 0.5 * (1.0 - cos (2.0 * NUMpi * phase));
					break;
				case 6: { /* Gaussian */
					double edge = exp (-12.0);
					phase -= 0.5;   /* -0.5 .. +0.5 */
					value = (exp (-48.0 * phase * phase) - edge) / (1.0 - edge);
					break;
				}
				break;
				default:
					value = 1.0;
			}
			my z[1][i] = value;
		}
		return me.transfer();
	} catch (MelderError) {
		Melder_throw ("Sound not created from window function.");
	}
}

/* y[n] = sum(i=-n, i=n, x[n+mi])/(2*n+1) */
Sound Sound_localAverage (Sound me, double averagingInterval, int windowType) {
	try {
		double windowDuration = windowType == 6 ? 2 * averagingInterval : averagingInterval;
		autoSound thee = Data_copy (me);
		autoSound window = Sound_createFromWindowFunction (windowDuration, 1 / my dx, windowType);

		long nswindow2 = window -> nx / 2;
		long nswindow2p = (window -> nx - 1) / 2; // nx is odd: one sample less in the forward direction
		if (nswindow2 < 1) {
			return thee.transfer();
		}
		double *w = window -> z[1];

		for (long k = 1; k <= thy ny; k++) {
			for (long i = 1; i <= my nx; i++) {
				double sum = 0, wsum = 0;
				long m = (nswindow2 + 1 - i + 1) < 1 ? 1 : (nswindow2 + 1 - i + 1);
				long jfrom = (i - nswindow2) < 1 ? 1 : (i - nswindow2);
				long jto = (i + nswindow2p) > my nx ? my nx : (i + nswindow2p);
				for (long j = jfrom; j <= jto; j++, m++) {
					sum += my z[k][j] * w[m];
					wsum += w[m];
				}
				thy z[k][i] = sum / wsum;
			}
		}
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw (me, ": no Sound (local average) created.");
	}
}

static void _Sound_garnish (Sound me, Graphics g, double tmin, double tmax, double minimum, double maximum) {
	Graphics_drawInnerBox (g);
	Graphics_textBottom (g, 1, L"Time (s)");
	Graphics_marksBottom (g, 2, 1, 1, 0);
	Graphics_setWindow (g, tmin, tmax, minimum - (my ny - 1) * (maximum - minimum), maximum);
	Graphics_markLeft (g, minimum, 1, 1, 0, NULL);
	Graphics_markLeft (g, maximum, 1, 1, 0, NULL);
	if (minimum != 0.0 && maximum != 0.0 && (minimum > 0.0) != (maximum > 0.0)) {
		Graphics_markLeft (g, 0.0, 1, 1, 1, NULL);
	}
	if (my ny == 2) {
		Graphics_setWindow (g, tmin, tmax, minimum, maximum + (my ny - 1) * (maximum - minimum));
		Graphics_markRight (g, minimum, 1, 1, 0, NULL);
		Graphics_markRight (g, maximum, 1, 1, 0, NULL);
		if (minimum != 0.0 && maximum != 0.0 && (minimum > 0.0) != (maximum > 0.0)) {
			Graphics_markRight (g, 0.0, 1, 1, 1, NULL);
		}
	}
}

static void _Sound_getWindowExtrema (Sound me, double *tmin, double *tmax, double *minimum, double *maximum, long *ixmin, long *ixmax) {
	if (*tmin == *tmax) {
		*tmin = my xmin;
		*tmax = my xmax;
	}

	Matrix_getWindowSamplesX (me, *tmin, *tmax, ixmin, ixmax);

	if (*minimum == *maximum) {
		Matrix_getWindowExtrema (me, *ixmin, *ixmax, 1, my ny, minimum, maximum);
		if (*minimum == *maximum) {
			*minimum -= 1.0;
			*maximum += 1.0;
		}
	}
}

/*
	 Given sample numbers isample and isample+1, where the formula evaluates to the booleans left and right, respectively.
	 We want to find the point in this interval where the formula switches from true to false.
	 The x-value of the best point is approximated by a number of bisections.
	 It is essential that the intermediate interpolated y-values are always between the values at points isample and isample+1.
	 We cannot use a sinc-interpolation because at strong amplitude changes high-frequency oscilations may occur.
	 (may be leave out the interpolation and just use Vector_VALUE_INTERPOLATION_LINEAR only?)
*/
static void Sound_findIntermediatePoint_bs (Sound me, long ichannel, long isample, bool left, bool right, const wchar_t *formula,
        Interpreter interpreter, int interpolation, long numberOfBisections, double *x, double *y) {
	if (left) {
		*x = Matrix_columnToX (me, isample);
		*y = my z[ichannel][isample];
	} else {
		*x = Matrix_columnToX (me, isample + 1);
		*y = my z[ichannel][isample + 1];
	}
	if ( (left && right) || (!left && !right)) {
		Melder_throw ("Invalid situation.");
	}

	if (numberOfBisections < 1) {
		return;
	}

	long nx = 3;
	double dx = my dx / 2;
	double xleft = Matrix_columnToX (me, isample);
	autoSound thee = Sound_create (my ny, my xmin, my xmax, nx, dx, xleft); // my domain !

	for (long channel = 1; channel <= my ny; channel++) {
		thy z[channel][1] = my z[channel][isample]; thy z[channel][3] = my z[channel][isample + 1];
	}

	Formula_compile (interpreter, thee.peek(), formula, kFormula_EXPRESSION_TYPE_NUMERIC, true);

	// bisection to find optimal x and y
	long istep = 1;
	double xright = xleft + my dx, xmid; // !!
	do {
		xmid = (xleft + xright) / 2;

		for (long channel = 1; channel <= my ny; channel++) {
			thy z[channel][2] = Vector_getValueAtX (me, xmid, channel, interpolation);
		}

		// Only thy x1 and thy dx have changed; It seems we don't have to recompile.
		struct Formula_Result result;
		Formula_run (ichannel, 2, & result);
		bool current = result.result.numericResult;

		dx /= 2;
		if ( (left && current) || (! left && ! current)) {
			xleft = xmid;
			left = current;
			for (long channel = 1; channel <= my ny; channel++) {
				thy z[channel][1] = thy z[channel][2];
			}
			thy x1 = xleft;
		} else if ( (left && ! current) || (!left && current)) {
			xright = xmid;
			right = current;
			for (long channel = 1; channel <= my ny; channel++) {
				thy z[channel][3] = thy z[channel][2];
			}
		} else {
			// we should not even be here.
			break;
		}

		thy xmin = xleft - dx / 2;
		thy xmax = xright + dx / 2;
		thy dx = dx;
		istep ++;
	} while (istep < numberOfBisections);

	*x = xmid;
	*y = thy z[ichannel][2];
}

void Sound_drawWhere (Sound me, Graphics g, double tmin, double tmax, double minimum, double maximum,
	bool garnish, const wchar_t *method, long numberOfBisections, const wchar_t *formula, Interpreter interpreter) {
	Formula_compile (interpreter, me, formula, kFormula_EXPRESSION_TYPE_NUMERIC, true);

	long ixmin, ixmax;
	_Sound_getWindowExtrema (me, &tmin, &tmax, &minimum, &maximum, &ixmin, &ixmax);

	// Set coordinates for drawing.

	Graphics_setInner (g);
	struct Formula_Result result;
	for (long channel = 1; channel <= my ny; channel ++) {
		Graphics_setWindow (g, tmin, tmax, minimum - (my ny - channel) * (maximum - minimum),
			maximum + (channel - 1) * (maximum - minimum));
		if (wcsstr (method, L"bars") || wcsstr (method, L"Bars")) {
			for (long ix = ixmin; ix <= ixmax; ix ++) {
				Formula_run (channel, ix, & result);
				if (result.result.numericResult) {
					double x = Sampled_indexToX (me, ix);
					double y = my z [channel] [ix];
					double left = x - 0.5 * my dx, right = x + 0.5 * my dx;
					if (y > maximum) {
						y = maximum;
					}
					if (left < tmin) {
						left = tmin;
					}
					if (right > tmax) {
						right = tmax;
					}
					Graphics_line (g, left, y, right, y);
					Graphics_line (g, left, y, left, minimum);
					Graphics_line (g, right, y, right, minimum);
				}
			}
		} else if (wcsstr (method, L"poles") || wcsstr (method, L"Poles")) {
			for (long ix = ixmin; ix <= ixmax; ix ++) {
				Formula_run (channel, ix, & result);
				if (result.result.numericResult) {
					double x = Sampled_indexToX (me, ix);
					double y = my z[channel][ix];
					if (y > maximum) {
						y = maximum;
					}
					if (y < minimum) {
						y = minimum;
					}
					Graphics_line (g, x, 0, x, y);
				}
			}
		} else if (wcsstr (method, L"speckles") || wcsstr (method, L"Speckles")) {
			for (long ix = ixmin; ix <= ixmax; ix ++) {
				Formula_run (channel, ix, & result);
				if (result.result.numericResult) {
					double x = Sampled_indexToX (me, ix);
					Graphics_fillCircle_mm (g, x, my z [channel] [ix], 1.0);
				}
			}
		} else {
			// The default: draw as a curve.

			bool current = true, previous = true;
			long istart = ixmin;
			double xb = Sampled_indexToX (me, ixmin), yb = my z[channel][ixmin], xe, ye;
			for (long ix = ixmin; ix <= ixmax; ix++) {
				Formula_run (channel, ix, & result);
				current = result.result.numericResult; // true means draw
				if (previous && not current) { // leaving drawing segment
					if (ix != ixmin) {
						if (ix - istart > 1) {
							xe = Matrix_columnToX (me, istart);
							ye = my z[channel][istart];
							Graphics_line (g, xb, yb, xe, ye);
							xb = xe; xe = Matrix_columnToX (me, ix - 1);
							Graphics_function (g, my z[channel], istart, ix - 1, xb, xe);
							xb = xe; yb = my z[channel][ix - 1];
						}
						Sound_findIntermediatePoint_bs (me, channel, ix - 1, previous, current, formula, interpreter, Vector_VALUE_INTERPOLATION_LINEAR, numberOfBisections, &xe, &ye);
						Graphics_line (g, xb, yb, xe, ye);
						Formula_compile (interpreter, me, formula, kFormula_EXPRESSION_TYPE_NUMERIC, true);
					}
				} else if (current && not previous) { // entry drawing segment
					istart = ix;
					Sound_findIntermediatePoint_bs (me, channel, ix - 1, previous, current, formula, interpreter, Vector_VALUE_INTERPOLATION_LINEAR, numberOfBisections, &xb, &yb);
					xe = Sampled_indexToX (me, ix), ye = my z[channel][ix];
					Graphics_line (g, xb, yb, xe, ye);
					xb = xe; yb = ye;
					Formula_compile (interpreter, me, formula, kFormula_EXPRESSION_TYPE_NUMERIC, true);
				} else if (previous && current && ix == ixmax) {
					xe = Matrix_columnToX (me, istart);
					ye = my z[channel][istart];
					Graphics_line (g, xb, yb, xe, ye);
					xb = xe; xe = Matrix_columnToX (me, ix);
					Graphics_function (g, my z[channel], istart, ix, xb, xe);
					xb = xe; yb = my z[channel][ix];
				}
				previous = current;
			}
		}
	}

	Graphics_setWindow (g, tmin, tmax, minimum, maximum);
	if (garnish && my ny == 2) {
		Graphics_line (g, tmin, 0.5 * (minimum + maximum), tmax, 0.5 * (minimum + maximum));
	}
	Graphics_unsetInner (g);

	if (garnish) {
		_Sound_garnish (me, g, tmin, tmax, minimum, maximum);
	}
}

void Sound_paintWhere (Sound me, Graphics g, Graphics_Colour colour, double tmin, double tmax,
                       double minimum, double maximum, double level, bool garnish, long numberOfBisections, const wchar_t *formula, Interpreter interpreter) {
	try {
		long ixmin, ixmax;
		struct Formula_Result result;

		Formula_compile (interpreter, me, formula, kFormula_EXPRESSION_TYPE_NUMERIC, true);

		_Sound_getWindowExtrema (me, &tmin, &tmax, &minimum, &maximum, &ixmin, &ixmax);

		Graphics_setColour (g, colour);
		Graphics_setInner (g);
		for (long channel = 1; channel <= my ny; channel++) {
			Graphics_setWindow (g, tmin, tmax,
			                    minimum - (my ny - channel) * (maximum - minimum),
			                    maximum + (channel - 1) * (maximum - minimum));
			bool current, previous = true, fill = false; // fill only when leaving area
			double tmini = tmin, tmaxi = tmax, xe, ye;
			long ix = ixmin;
			do {
				Formula_run (channel, ix, & result);
				current = result.result.numericResult;
				if (ix == ixmin) {
					previous = current;
				}
				if (previous != current) {
					Sound_findIntermediatePoint_bs (me, channel, ix - 1, previous, current, formula, interpreter, Vector_VALUE_INTERPOLATION_LINEAR, numberOfBisections, &xe, &ye);
					if (current) { // entering painting area
						tmini = xe;
					} else { //leaving painting area
						tmaxi = xe;
						fill = true;
					}
					Formula_compile (interpreter, me, formula, kFormula_EXPRESSION_TYPE_NUMERIC, true);
				}
				if (ix == ixmax && current) {
					tmaxi = tmax;
					fill = true;
				}
				if (fill) {
					autoPolygon him = Sound_to_Polygon (me, channel, tmini, tmaxi, minimum, maximum, level);
					Graphics_fillArea (g, his numberOfPoints, &his x[1], &his y[1]);
					fill = false;
				}
				previous = current;
			} while (++ix <= ixmax);
		}
		Graphics_setWindow (g, tmin, tmax, minimum, maximum);
		if (garnish && my ny == 2) {
			Graphics_line (g, tmin, 0.5 * (minimum + maximum), tmax, 0.5 * (minimum + maximum));
		}
		Graphics_unsetInner (g);
		if (garnish) {
			_Sound_garnish (me, g, tmin, tmax, minimum, maximum);
		}
	} catch (MelderError) {
		Melder_clearError ();
	}
}

void Sounds_paintEnclosed (Sound me, Sound thee, Graphics g, Graphics_Colour colour, double tmin, double tmax,
                           double minimum, double maximum, bool garnish) {
	try {
		long ixmin, ixmax, numberOfChannels = my ny > thy ny ? my ny : thy ny;
		double min1 = minimum, max1 = maximum, tmin1 = tmin, tmax1 = tmax;
		double min2 = min1, max2 = max1, tmin2 = tmin1, tmax2 = tmax1;
		double xmin = my xmin > thy xmin ? my xmin : thy xmin;
		double xmax = my xmax < thy xmax ? my xmax : thy xmax;
		if (xmax <= xmin) {
			return;
		}
		if (tmin >= tmax) {
			tmin = xmin;
			tmax = xmax;
		}
		_Sound_getWindowExtrema (thee, &tmin1, &tmax1, &min1, &max1, &ixmin, &ixmax);
		_Sound_getWindowExtrema (me,   &tmin2, &tmax2, &min2, &max2, &ixmin, &ixmax);
		minimum = min1 < min2 ? min1 : min2;
		maximum = max1 > max2 ? max1 : max2;

		Graphics_setColour (g, colour);
		Graphics_setInner (g);
		for (long channel = 1; channel <= numberOfChannels; channel++) {
			autoPolygon him = Sounds_to_Polygon_enclosed (me, thee, channel, tmin, tmax, minimum, maximum);
			Graphics_setWindow (g, tmin, tmax,
			                    minimum - (numberOfChannels - channel) * (maximum - minimum),
			                    maximum + (channel - 1) * (maximum - minimum));
			Graphics_fillArea (g, his numberOfPoints, &his x[1], &his y[1]);
		}
		Graphics_setWindow (g, tmin, tmax, minimum, maximum);
		if (garnish && (my ny == 2 || thy ny == 2)) {
			Graphics_line (g, tmin, 0.5 * (minimum + maximum), tmax, 0.5 * (minimum + maximum));
		}
		Graphics_unsetInner (g);
		if (garnish) {
			_Sound_garnish (my ny == 2 ? me : thee, g, tmin, tmax, minimum, maximum);
		}
	} catch (MelderError) {
		Melder_clearError ();
	}
}

Sound Sound_copyChannelRanges (Sound me, const wchar_t *ranges) {
	try {
		long numberOfChannels;
		autoNUMvector <long> channels (NUMstring_getElementsOfRanges (ranges, my ny, & numberOfChannels, NULL, L"channel", true), 1);
		autoSound thee = Sound_create (numberOfChannels, my xmin, my xmax, my nx, my dx, my x1);
		for (long i = 1; i <= numberOfChannels; i++) {
			double *from = my z[channels[i]], *to = thy z[i];
			NUMvector_copyElements<double> (from, to, 1, my nx);
		}
		return thee.transfer();
	} catch (MelderError) {
		Melder_throw (me, ": could not extract channels.");
	}
}

/* After a script by Ton Wempe */
Sound Sound_removeNoiseBySpectralSubtraction_mono (Sound me, Sound noise, double windowLength) {
	try {
		if (my dx != noise -> dx) {
			Melder_throw ("The sound and the noise must have the same sampling frequency.");
		}
		if (noise -> ny != 1 || noise -> ny != 1) {
			Melder_throw ("The number of channels in the noise and the sound should equal 1.");
		}
		double samplingFrequency = 1.0 / my dx;
		autoSound denoised = Sound_create (1, my xmin, my xmax, my nx, my dx, my x1);
		autoSound analysisWindow = Sound_createSimple (1, windowLength, samplingFrequency);
		long windowSamples = analysisWindow -> nx;
		autoSound noise_copy = (Sound) Data_copy (noise);
		Sound_multiplyByWindow (noise_copy.peek(), kSound_windowShape_HANNING);
		double bandwidth = samplingFrequency / windowSamples;
		autoLtas noiseLtas = Sound_to_Ltas (noise_copy.peek(), bandwidth);
		autoNUMvector<double> noiseAmplitudes (1, noiseLtas -> nx);
		for (long i = 1; i <= noiseLtas -> nx; i++) {
			noiseAmplitudes[i] = pow (10.0, (noiseLtas -> z[1][i] - 94) / 20);
		}
		long stepSizeSamples = windowSamples / 4;
		long numberOfSteps = my nx / stepSizeSamples;
		for (long istep = 1; istep <= numberOfSteps; istep++) {
			long istart = (istep - 1) * stepSizeSamples + 1;

			if (istart >= my nx) {
				break; // finished
			}
			long nsamples = istart + windowSamples - 1 > my nx ? my nx - istart + 1 : windowSamples;
			for (long j = 1; j <= nsamples; j++) {
				analysisWindow -> z[1][j] = my z[1][istart - 1 + j];
			}
			for (long j = nsamples + 1; j <= windowSamples; j++) {
				analysisWindow -> z[1][j] = 0;
			}
			autoSpectrum analysisSpectrum = Sound_to_Spectrum (analysisWindow.peek(), 0);

			// Suppress noise in the analysisSpectrum by subtracting the noise spectrum

			double *x = analysisSpectrum -> z[1], *y = analysisSpectrum -> z[2];
			for (long i = 1; i <= analysisSpectrum -> nx; i++) {
				double amp = sqrt (x[i] * x[i] + y[i] * y[i]);
				double factor = 1 - 1.5 * noiseAmplitudes[i] / amp;
				factor = factor < 1e-6 ? 1e-6 : factor;
				x[i] *= factor; y[i] *= factor;
			}
			autoSound suppressed = Spectrum_to_Sound (analysisSpectrum.peek());
			Sound_multiplyByWindow (suppressed.peek(), kSound_windowShape_HANNING);
			for (long j = 1; j <= nsamples; j++) {
				denoised -> z[1][istart - 1 + j] += 0.5 * suppressed -> z[1][j]; // 0.5 because of 2-fold oversampling
			}
		}
		return denoised.transfer();
	} catch (MelderError) {
		Melder_throw (me, ": noise not subtracted.");
	}
}

static void Sound_findNoise (Sound me, double minimumNoiseDuration, double *noiseStart, double *noiseEnd) {
	try {
		*noiseStart = NUMundefined; *noiseEnd = NUMundefined;
		autoIntensity intensity = Sound_to_Intensity (me, 20, 0.005, 1);
		double tmin = Vector_getXOfMinimum (intensity.peek(), intensity -> xmin, intensity ->  xmax, 1) - minimumNoiseDuration / 2;
		double tmax = tmin + minimumNoiseDuration;
		if (tmin < my xmin) {
			tmin = my xmin; tmax = tmin + minimumNoiseDuration;
		}
		if (tmax > my xmax) {
			tmax = my xmax; tmin = tmax - minimumNoiseDuration;
		}
		if (tmin < my xmin) {
			Melder_throw ("Sound too short, or window length too long.");
		}
		*noiseStart = tmin; *noiseEnd = tmax;
	} catch (MelderError) {
		Melder_throw (me, ": noise not found.");
	}
}

Sound Sound_removeNoise (Sound me, double noiseStart, double noiseEnd, double windowLength, double minBandFilterFrequency, double maxBandFilterFrequency, double smoothing, int method) {
	try {
		autoSound filtered = Sound_filter_passHannBand (me, minBandFilterFrequency, maxBandFilterFrequency, smoothing);
		autoSound denoised = Sound_create (my ny, my xmin, my xmax, my nx, my dx, my x1);
		bool findNoise = noiseEnd <= noiseStart;
		double minimumNoiseDuration = 2 * windowLength;
		for (long ichannel = 1; ichannel <= my ny; ichannel++) {
			autoSound denoisedi, channeli = Sound_extractChannel (filtered.peek(), ichannel);
			if (findNoise) {
				Sound_findNoise (channeli.peek(), minimumNoiseDuration, &noiseStart, &noiseEnd);
			}
			autoSound noise = Sound_extractPart (channeli.peek(), noiseStart, noiseEnd, kSound_windowShape_RECTANGULAR, 1.0, false);
			if (method == 1) { // spectral subtraction
				denoisedi.reset (Sound_removeNoiseBySpectralSubtraction_mono (filtered.peek(), noise.peek(), windowLength));
			}
			NUMvector_copyElements<double> (denoisedi -> z[1], denoised -> z[ichannel], 1, my nx);
		}
		return denoised.transfer();
	} catch (MelderError) {
		Melder_throw (me, ": not denoised.");
	}
}

void Sound_playAsFrequencyShifted (Sound me, double shiftBy, double newSamplingFrequency, long precision) {
	try {
		autoSpectrum spectrum = Sound_to_Spectrum (me, 1);
		autoSpectrum shifted = Spectrum_shiftFrequencies (spectrum.peek(), shiftBy, newSamplingFrequency / 2, precision);
		autoSound thee = Spectrum_to_Sound (shifted.peek());
		Sound_playPart (thee.peek(), my xmin, my xmax, NULL, NULL);
	} catch (MelderError) {
		Melder_throw (me, " not played with frequencies shifted.");
	}
}

/* End of file Sound_extensions.cpp */
